Report for Sequence Feature Glyma06g38600
Feature Type: gene_model
Chromosome: Gm06
Start: 41582344
stop: 41587561
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g38600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G13682 AT
Annotation by Michelle Graham. TAIR10: LSD1-like2 | chr3:4479193-4481509 REVERSE LENGTH=746
SoyBase E_val: 0 ISS
GO:0051568 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone H3-K4 methylation
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0008131 GO-mf
Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
KOG0029
KOG
Amine oxidase
JGI ISS
PTHR10742 Panther
AMINE OXIDASE
JGI ISS
PTHR10742:SF30 Panther
AMINE OXIDASE
JGI ISS
PF01593 PFAM
Flavin containing amine oxidoreductase
JGI ISS
PF04433 PFAM
SWIRM domain
JGI ISS
UniRef100_B9T642 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Flavin-containing amine oxidase domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T642_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1KE11 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KE11_SOYBN
SoyBase E_val: 0 ISS
Proteins Associated with Glyma06g38600
Locus Gene Symbol Protein Name
LDL2-1 LSD2-like2 gene 1
Expression Patterns of Glyma06g38600
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma06g38600 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g250100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g38600
Coding sequences of Glyma06g38600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g38600.1 sequence type=CDS gene model=Glyma06g38600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAACCCCGTCTTCAAATGGATCGGTTTCGAAGCGTTCGCTGAGGAGGAAGGTGAATTTGAGGAACTATGATGAGGATCTGATGGATGAGATGTTTGAGAAGCAGTTGGGAGGTGGTTTGAAGAAGAGGAGTAGGACTAAGGAAGATTTGGAGAAGGAAACTGAGACTGAGGCTATGATTGCGATGTCGCTCGGTTTTCCTATTGATGCTTTGCTTGAGGAGGAGATTAAAGCTGGGGTTGTGAGGGAGTTGGGTGGGAAGGAGCAGAATGATTATATAGTCATAAGGAATCATATATTGGCTCTGTGGAGGAGGGGGAATGTCAGGTTGTGGTTGAGTAAAGGGATGGTTAGAGAAACTGTGAGCAATGAGTATGATCATTTGATTAATTCTGCTTATGACTATCTTTTGTATAACGGCTACATAAATTTTGGCGTTTCACCCGCGTTTACTTCTCAGTTGCCCGAGTCAACTGAGGGGACTGCGGTTGTTATTGGTGCTGGCCTTGCCGGGTTGGCAGCAGCGAGGCAACTCTTGTCGTTTGGTTACAAGGTTGTGGTTTTGGAAGGCAGGAGCCGGCCTGGTGGTCGAGTTTATACTCAGAAGGTGGGGCGCGAGGGTAAGTTTGCTTCCATTGATCTTGGTGGGAGTATTATTACAGGCATTCATGCTAACCCTTTAGGGGTTCTGGCTCGACAGCTTTCTATACCACTTCATAAAGTCAGAGATGATTGCCCTTTGTATAAGCCAAATGGGGCACCGGTTGATAAGGAAACGGATGCAAGCGTTGAATTTGTATTCAATAAGTTGCTTGACAAGGTTATGGAGTTGAGGCAAATTATGGGTGGGTTCGCAAGTGATACCTCTCTTGGTTCGGTCTTGGAGATGCTCAGGCGGTTGTATAATGTGACCCGAAGTACAGATGAGAAGCAGTTGCTTGATTGGCATCTTGCAAATTTGGAATATGCAAATGCTGGGTGCCTTTCAAATCTTTCGGCTGCCTATTGGGATCAAGATGATCCTTATGAAATGAGCGGTGATCACTGCTTTCTTGCTGGAGGAAATATGGGGTTGATAAAAGCTTTATGTGAAGGAGTTCCTGTTTTTTATGGAAAGACCGTCAATACTATCAGATATGGAAATGAGGGTGTTGAGGTTATTGCTGGGGAACATGTCTTTCAAGCAGATATCGCCTTATGCACTGTGCCTCTTGGAGTTCTTAAAAAGAAGGCCATCAGTTTTGAACCTGAATTGCCTGCAAGGAAATTGGAAGCAATTGAGAGGATGGGGTTTGGGCTGCTGAACAAGGTTGCTATGGTTTTTCCTCATGTGTTTTGGGGGGAAGATCGAGACACATTTGGATGTCTCAATGAACATAGTCATCAACGTGGGGAATTTTTCCTATTTTACTGTTACCATACAGTTTCTGGAGGTCCAGCACTTATTGCGCTGGTGGCTGGTGAAGCTGCACAAGCCTTTGAATCCACAGATGCTTCCATTTTGCTGCATCGGGTTTTGACCGTGTTAAAAGGAATATTTCATCCCAAAGGCATCATTGTGCCTGATCCAATACAGTCAATTTGTACAAGATGGGGCAGTGATCCCCTTTCTTATGGTTCCTACTCTCATGTTAGCGTTAATTCATCTGGTGCCGATTATGATATACTCGCTGAAAACGTGGGGAATAGATTGTTCTTTGCTGGTGAGGCCACGAGTAGGCAATACCCAGCTACTATGCATGGTGCTTTCTTGAGTGGCTTAAGGGAAGCATCACACATTTACCGATCAGCTCGGATTCAAAACAATCCTAGGAAGTGCATGCCTAAGAATATCGTAAGCAATGACATCCTGGGTGATTTATTCAAGTGGCCTGATTTGGAATTTGGGAAGTTTGCTTTCATTTTTTATCCGTCTCCAGAAAATCTGCAGTCAACGGGGCTTCTGCAAGTCACTATTGGTGATGCTGAAGAAATTTATGAGGAGCTGTTTAGCAGCTACCCAAATGCAGCAAAATGGCCCTTGCAGCTGTACACTATAATATCCCGTGAACAAGCCCAGCAGCTACAAAAAGTTGAGGGAGGGAATGAAAGCCTGTTATCCTTTTTGGTAAAAACCCTTGGCTTAAAGCTTATGGGGCCAAATGCTTTGCTTACTGCAGGCAACACATTGATAGCTAGCATAGCTCATTCACGGAAAGGCCGGTGGAGGAACCGTGTAATTACTTGTTAA
Predicted protein sequences of Glyma06g38600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g38600.1 sequence type=predicted peptide gene model=Glyma06g38600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
METPSSNGSVSKRSLRRKVNLRNYDEDLMDEMFEKQLGGGLKKRSRTKEDLEKETETEAMIAMSLGFPIDALLEEEIKAGVVRELGGKEQNDYIVIRNHILALWRRGNVRLWLSKGMVRETVSNEYDHLINSAYDYLLYNGYINFGVSPAFTSQLPESTEGTAVVIGAGLAGLAAARQLLSFGYKVVVLEGRSRPGGRVYTQKVGREGKFASIDLGGSIITGIHANPLGVLARQLSIPLHKVRDDCPLYKPNGAPVDKETDASVEFVFNKLLDKVMELRQIMGGFASDTSLGSVLEMLRRLYNVTRSTDEKQLLDWHLANLEYANAGCLSNLSAAYWDQDDPYEMSGDHCFLAGGNMGLIKALCEGVPVFYGKTVNTIRYGNEGVEVIAGEHVFQADIALCTVPLGVLKKKAISFEPELPARKLEAIERMGFGLLNKVAMVFPHVFWGEDRDTFGCLNEHSHQRGEFFLFYCYHTVSGGPALIALVAGEAAQAFESTDASILLHRVLTVLKGIFHPKGIIVPDPIQSICTRWGSDPLSYGSYSHVSVNSSGADYDILAENVGNRLFFAGEATSRQYPATMHGAFLSGLREASHIYRSARIQNNPRKCMPKNIVSNDILGDLFKWPDLEFGKFAFIFYPSPENLQSTGLLQVTIGDAEEIYEELFSSYPNAAKWPLQLYTIISREQAQQLQKVEGGNESLLSFLVKTLGLKLMGPNALLTAGNTLIASIAHSRKGRWRNRVITC*
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